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Tutorials, software suggestions, reading material

This is a collection of links, working papers and tutorials for some of the topics in statistics that I'm more familiar with, or some of the software I regularly use in my work. I try to check links regularly and make sure they're still active, but if you manage to spot one that I missed, I'd be grateful if you sent me an email reporting which one is no longer working - I'll try to find a replacement and keep the list maintained. Thanks!

This is the point at which it begins to feel like this.

Mixed effects models

R